Without being familiar with your exact setup and what codes are actually being thrown by the module, it's kind of a shot in the dark. But any time the system is opened for any reason, it should be bled thoroughly. Especially on abs equipped vehicles. Air will slowly rise on it's own through the system from the calipers to the master cylinder. It sounds as if that's the concern. You cant compress liquids but you can compress air (gas) so if theres a pocket in the master, the pedal will go to the floor the first couple strokes until fluid from the res displaces it. Air in the module can also throw codes due to the pressure sensors reading low.
Doing it the old fashioned way (with another person pumping the pedal) will eliminate the air 90% of the time. You may just end up running through a couple pints of fluid to work all of it out. Sometimes it's difficult to get air out of the abs valve body. In which case, you can bleed like you normally would (with a buddy) but instead of just cracking the bleeder on the caliper, you also crack the input/output lines on the abs module in succession.
Even then, some air may remain and give you a soft pedal. At that point, you need to clear the codes and ensure none return due to other problems (like a damaged wheel speed sensor). Find some sand or gravel and force an abs skid (panic stop on the loose surface to actuate the pump).
The codes need to be cleared because detected faults can lockout abs function. When the pump runs with the high pedal pressure you exert, it will force out air remaining in the module. Then simply bleed all 4 wheels again at the calipers.