If some of the accessories already have inline fuses then there isn't much point in double fusing them, and in fact it would make it more complicated to diagnose a loss of power.
If you want all your fuses in a centralized place you could cut off the inline fuses and run those accessories off similar sized fuses in your BlueSea fuse box.
Or, if you don't want to modify the wires or take up space in the BlueSea fuse box you could wire the 100A breaker to the positive terminal of the battery, and then hook up the protected side of the breaker to a buss bar. Your accessories with inline fuses would connect to the bus bar, and you could run a wire from the buss bar to your BlueSea fuse box.
This is how I have my Tacoma setup.
- 100A breaker fed from the battery. This shuts off all of the non-factory electronics on the truck.
- Breaker feeds a buss bar mounted to the side of the engine compartment.
- Buss bar powers...
- My ARB compressor (inline fuses)
- An 8AWG wire to the back of the truck (inline fuse)
- SPOD (inline fuse) which fuses/switches my other accessories.
Instead of a breaker you could also run a terminal post fuse which mounts directly onto the battery terminal. These are nice because there is no unprotected section of wire, but I prefer a breaker (with as short a wire as possible) so that there is a way to manually disconnect all of the non-factory electronics.